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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Charlie O'Brien | 19th | Tied for 9th | 21st | |
| First Basemen | Fred McGriff | 18th | Tied for 4th | 20th | |
| Second Basemen | Mark Lemke | 27th | Tied for 10th | 27th | |
| Third Basemen | Chipper Jones | 15th | Tied for 4th | 17th | |
| Shortstops | Mike Mordecai | 11th | Tied for 8th | 17th | |
| Left Fielders | Ryan Klesko | 12th | Tied for 11th | 19th | |
| Center Fielders | Mike Kelly | 30th | Tied for 11th | 30th | |
| Right Fielders | David Justice | 8th | Brian Kowitz | 4th | 6th |
| Starting Pitchers | Greg Maddux | 1st | Jason Schmidt | 3rd | 2nd |
| Relievers | Pedro Borbon | 1st | Brad Clontz | 1st | 1st |
| Closers | Mark Wohlers | 7th | Brad Clontz | 1st | 3rd |
